SNP Profiles of PA 150   View Data

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 Key

 1234567891011121314
_Input profile
CCCCGGACAAAAGGCCAAGGGGAAAGAC
1._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
2._GC-01-34-2-11
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
3._PA_150_[PER]_Fld#_173_Plt#_1
AACCAACCAAGGGGCCAAGGGGAAAAAA
4._RUQ_1731
AACCAACCAAGGGGCCAAGGGGAAAAAA
5._PA_150_[PER]
_____TTGG_AA_____
6._PA_150_[PER]
_____TTGG_AA_____
7._PA_150_[PER]
_____TTGG_AA_____
8._PA_150_[PER]
_____TTGG_AA_____
9._PA_150_[PER]
_____TTGG_AA_____
10._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
11._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
12._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
13._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
14._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
15._RUQ_1731
______GG_______
16._PA_150_[PER]
_____CTGG_AA_____
17._PA_150_[PER]
_____CTGG_______
18._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
19._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
20._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
21._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
22._PA_150_[PER]
_____CCGG_AA_____
23._PA_150_[PER]
_____CCGG_AA_____
24._PA_150_[PER]
_____CCGG_AA_____
25._PA_150_[PER]
_____CCGG_AA_____
26._GC-01-034-2-11
CCACAGACTTCTAGGGATCTAGCTCCGT
27._PA_150_[PER]
_____CCAG_AA_____
28._PA_150_[PER]
_____CCAG_AA_____
29._PA_150_[PER]
_____CCAG_AA_____
30._PA_150_[PER]
_____CCAG_AA_____
31._PA_150_[PER]
_____CTAG_AT_____
 1516171819202122232425262728
_Input profile
AAAAAGAGACGGAGAGACAACGAAACAA
1._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
2._GC-01-34-2-11
AAAAAGAAACGGAAGGCCGGCCGGCCGG
3._PA_150_[PER]_Fld#_173_Plt#_1
AAAAAAAAACGGAAGGACGGCCAGCC_
4._RUQ_1731
AAAAAAAAACGGAAGGACGGCCAGCCGG
5._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
6._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
7._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
8._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
9._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
10._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
11._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
12._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
13._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
14._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
15._RUQ_1731
_TT______AC_GG___
16._PA_150_[PER]
_TTTT_AA_TT_ACTTCCAAGGCT
17._PA_150_[PER]
_GTTT_CC___CCTTCGAGGGTT
18._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
19._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
20._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
21._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
22._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCC
23._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCC
24._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCC
25._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCC
26._GC-01-034-2-11
CTGTCCTTACAGCTCTAACTCGAGGTCT
27._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCC
28._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCC
29._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCC
30._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCC
31._PA_150_[PER]
_GTCC_AC_CT_AACTCGAGGTCT
 2930313233343536373839404142
_Input profile
AATTGGACCGAGGGGGGGCCATATGGGG
1._GC-01-34-2-11
AATTGGACCGAGGGGGGGCCATATGGGG
2._GC-01-34-2-11
AGTTGGACGGAGGGGGGGCCTTATGGGG
3._PA_150_[PER]_Fld#_173_Plt#_1
AGATGGAAGGGGGGGGGGCCTTAAGGGG
4._RUQ_1731
AGATGGAAGGGGGGGGGGCCTTAAGGGG
5._PA_150_[PER]
TT__AACGAG_CCGG__AT__
6._PA_150_[PER]
TT__AACGAG_CCGG__AT__
7._PA_150_[PER]
TT__AACGAG_CCGG__AT__
8._PA_150_[PER]
TT__AACGAG_CCGG__AT__
9._PA_150_[PER]
TT__AACGAG_CCGG__AT__
10._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
11._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
12._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
13._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
14._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
15._RUQ_1731
_____GG______GG_
16._PA_150_[PER]
CC__AACCAA_CTGG__TT__
17._PA_150_[PER]
___AC_AA_CCCC__TT__
18._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
19._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
20._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
21._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
22._PA_150_[PER]
CT__AACCGG_CCGG__AA__
23._PA_150_[PER]
CT__AACCGG_CCGG__AA__
24._PA_150_[PER]
CT__AACCGG_CCGG__AA__
25._PA_150_[PER]
CT__AA_GG_CCGG__AA__
26._GC-01-034-2-11
CTATGGACCCAAGGCCCGGTAAATAGGG
27._PA_150_[PER]
CT__AACCAG_CCGG__AT__
28._PA_150_[PER]
CT__AACCAG_CCGG__AT__
29._PA_150_[PER]
CT__AACCAG_CCGG__AT__
30._PA_150_[PER]
CT__AACCAG_CCGG__AT__
31._PA_150_[PER]
CT__ACCCAA_CCCG__AT__
 4344454647484950515253545556
_Input profile
AAAAGGGGGGATGGAGCCACGGAAAGGG
1._GC-01-34-2-11
AAAAGGGGGGATGGAGCCACGGAAAGGG
2._GC-01-34-2-11
AAAAGGGGGGTTGGGGCCACAAACAGCG
3._PA_150_[PER]_Fld#_173_Plt#_1
AAAAGGGGGGAAGGGGCCACAAAAAGCG
4._RUQ_1731
AAAAGGGGGGAAGGGGCCACAAAAAGCG
5._PA_150_[PER]
AA___GG____AC_TT_GG
6._PA_150_[PER]
AA___GG____AC_TT_GG
7._PA_150_[PER]
AA___GG____AC_TT_GG
8._PA_150_[PER]
AA___GG____AC_TT_GG
9._PA_150_[PER]
AA___GG____AC_TT_GG
10._GC-01-034-2-11
AATTGGGGGGATCC_CCACGGTTAGGG
11._GC-01-034-2-11
AATTGGGGGGATCC_CCACGGTTAGGG
12._GC-01-034-2-11
AATTGGGGGGATCC_CCACGGTTAGGG
13._GC-01-034-2-11
AATTGGGGGGATCC_CCACGGTTAGGG
14._GC-01-034-2-11
AATTGGGGGGATCC_CCACGGTTAGGG
15._RUQ_1731
_________AA___CG
16._PA_150_[PER]
AA___GG____CC_GT_GG
17._PA_150_[PER]
AA___GG____AC_GG_GG
18._GC-01-034-2-11
AATTGGGGGGTTCC_CCACAAGTAGCG
19._GC-01-034-2-11
AATTGGGGGGTTCC_CCACAAGTAGCG
20._GC-01-034-2-11
AATTGGGGGGTTCC_CCACAAGTAGCG
21._GC-01-034-2-11
AATTGGGGGGTTCC_CCACAAGTAGCG
22._PA_150_[PER]
AA___GG____AC_TT_CG
23._PA_150_[PER]
AA___GG____AC_TT_CG
24._PA_150_[PER]
AA___GG____AC_TT_CG
25._PA_150_[PER]
AA___GG____AC_TT_CG
26._GC-01-034-2-11
AACTAGAGGGATCG_ACACAGGTAGCC
27._PA_150_[PER]
AA___GG____AC_GT_CG
28._PA_150_[PER]
AA___GG____AC_GT_CG
29._PA_150_[PER]
AA___GG____AC_GT_CG
30._PA_150_[PER]
AA___GG____AC_GT_CG
31._PA_150_[PER]
AA___GG____AC_GT_CC
 5758596061626364656667686970
_Input profile
AAGGAGAAGGAAACGGAAAAAAAAAACC
1._GC-01-34-2-11
AAGGAGAAGGAAACGGAAAAAAAAAACC
2._GC-01-34-2-11
CCGGAGAAAGAACCAGAAAACCAAAACG
3._PA_150_[PER]_Fld#_173_Plt#_1
ACGGAGAAAAAACCAGAAAACCAAAAGG
4._RUQ_1731
ACGGAGAAAAAACCAGAAAACCAAAAGG
5._PA_150_[PER]
AA__TT__GT_______
6._PA_150_[PER]
AA__TT__GT_______
7._PA_150_[PER]
AA__TT__GT_______
8._PA_150_[PER]
AA__TT__GT_______
9._PA_150_[PER]
AA__TT__GT_______
10._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
11._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
12._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
13._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
14._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
15._RUQ_1731
AC_CT___GGAG____AATT
16._PA_150_[PER]
AA__CT__GG_______
17._PA_150_[PER]
AC__CT__GG_______
18._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
19._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
20._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
21._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
22._PA_150_[PER]
AC__TT__GG_______
23._PA_150_[PER]
AC__TT__GG_______
24._PA_150_[PER]
AC__TT__GG_______
25._PA_150_[PER]
AC__TT__GG_______
26._GC-01-034-2-11
ACCCCTTTAAAAGGAGTTTTGTTTACCG
27._PA_150_[PER]
CC__TT__GG_______
28._PA_150_[PER]
CC__TT__GG_______
29._PA_150_[PER]
CC__TT__GG_______
30._PA_150_[PER]
CC__TT__GG_______
31._PA_150_[PER]
AC__TT__GG_______
 717273747576777879808182  
_Input profile
GGCCAGGGGGCCAAGGGGAAAGGGX_XX_X
1._GC-01-34-2-11
GGCCAGGGGGCCAAGGGGAAAGGGX_XX_X
2._GC-01-34-2-11
GGCCGGGGGGCCAGCCGGAAAGAGX_XX_X
3._PA_150_[PER]_Fld#_173_Plt#_1
AGCCGGGGGGCCAGCCGGAAGGAGX_XX_X
4._RUQ_1731
AGCCGGGGGGCCAGCCGGAAGGAGX_XX_X
5._PA_150_[PER]
_GGCT___TTGG_AACTGGX_XX_X
6._PA_150_[PER]
_GGCT___TTGG_AACTGGX_XX_X
7._PA_150_[PER]
_GGCT___TTGG_AACTGGX_XX_X
8._PA_150_[PER]
_GGCT___TTGG_AACTGGX_XX_X
9._PA_150_[PER]
_GGCT___TTGG_AACTGGX_XX_X
10._GC-01-034-2-11
_GGCTCCGGCCTTGGCCAACTGGX_XX_X
11._GC-01-034-2-11
_GGCTCCGGCCTTGGCCAACTGGX_XX_X
12._GC-01-034-2-11
_GGCTCCGGCCTTGGCCAACTGGX_XX_X
13._GC-01-034-2-11
_GGCTCCGGCCTTGGCCAACTGGX_XX_X
14._GC-01-034-2-11
_GGCTCCGGCCTTGGCCAACTGGX_XX_X
15._RUQ_1731
_GG__GG______AGX_XX_X
16._PA_150_[PER]
_CCCT___CTGG_AACTAGX_XX_X
17._PA_150_[PER]
_CCCC___CCCG_AACTAAX_XX_X
18._GC-01-034-2-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
19._GC-01-034-2-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
20._GC-01-034-2-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
21._GC-01-034-2-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
22._PA_150_[PER]
_GGCC___CTCC_AACCAGX_XX_X
23._PA_150_[PER]
_GGCC___CTCC_AACCAGX_XX_X
24._PA_150_[PER]
_GGCC___CTCC_AACCAGX_XX_X
25._PA_150_[PER]
_GGCC___CTCC_AACCAGX_XX_X
26._GC-01-034-2-11
AACGCTCGAGCCCTCCCCATCTAGX_XX_X
27._PA_150_[PER]
_GGCC___CTCC_AACTAGX_XX_X
28._PA_150_[PER]
_GGCC___CTCC_AACTAGX_XX_X
29._PA_150_[PER]
_GGCC___CTCC_AACTAGX_XX_X
30._PA_150_[PER]
_GGCC___CTCC_AACTAGX_XX_X
31._PA_150_[PER]
_CGCT___CTCC_ATCTAGX_XX_X

Input profile: PA_150_[PER] GC-01-34-2-11

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

1._PA_150_[PER] GC-01-34-2-11

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

2._PA_150_[PER] GC-01-34-2-11

75 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

3._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

71.6 %
81 shared markers

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USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

4._PA_150_[PER] RUQ_1731

70.7 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._PA_150_[PER]

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

6._PA_150_[PER]

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

7._PA_150_[PER]

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

8._PA_150_[PER]

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

9._PA_150_[PER]

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

10._PA_150_[PER] GC-01-034-2-11

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._PA_150_[PER] GC-01-034-2-11

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

14._PA_150_[PER] GC-01-034-2-11

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

15._PA_150_[PER] RUQ_1731

50 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._PA_150_[PER]

45.7 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

17._PA_150_[PER]

40.3 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

18._PA_150_[PER] GC-01-034-2-11

38.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._PA_150_[PER] GC-01-034-2-11

38.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._PA_150_[PER] GC-01-034-2-11

38.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._PA_150_[PER] GC-01-034-2-11

38.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

22._PA_150_[PER]

38.6 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

23._PA_150_[PER]

38.6 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

24._PA_150_[PER]

38.6 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

25._PA_150_[PER]

38.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

26._PA_150_[PER] GC-01-034-2-11

37 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

27._PA_150_[PER]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._PA_150_[PER]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

29._PA_150_[PER]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

30._PA_150_[PER]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

31._PA_150_[PER]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998